3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07443

Details:

PFam ID : PF07443

PFam Domain Description : HepA-related protein (HARP)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 46

Average sequence length: 53.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07443	D3YUX5_MOUSE_66_106	36.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07443	D6WYV9_TRICA_86_142	100

Sequence based PCA Plot of the family - PF07443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=16 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay