3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07440

Details:

PFam ID : PF07440

PFam Domain Description : Caerin 1 protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 21.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07440	D6Z2S5_DESAT_1_189	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07440	Q800R7_LITCE_50_72	100

Sequence based PCA Plot of the family - PF07440 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay