3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07435

Details:

PFam ID : PF07435

PFam Domain Description : YycH protein

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 135

Average sequence length: 389.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07435	B2A442_NATTJ_4_112	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07435	D5DMF8_BACMD_6_455	100

Sequence based PCA Plot of the family - PF07435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=309 Length=8
Motif2 Start=119 Length=8
Motif3 Start=1 Length=8
Motif4 Start=10 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay