3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07432

Details:

PFam ID : PF07432

PFam Domain Description : Histone H1-like protein Hc1

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 42

Average sequence length: 70.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07432	D9PUX3_METTM_1_84	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07432	D0MJZ0_RHOM4_2_58	100

Sequence based PCA Plot of the family - PF07432 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay