3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07429

Details:

PFam ID : PF07429

PFam Domain Description : 4-alpha-L-fucosyltransferase glycosyl transferase group 56

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 81

Average sequence length: 298.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07429	C3RR99_9FIRM_151_327	85.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07429	E9CP51_9ENTR_1_56	96.2

Sequence based PCA Plot of the family - PF07429 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=8
Motif2 Start=218 Length=11
Motif3 Start=191 Length=11
Motif4 Start=105 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay