3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07424

Details:

PFam ID : PF07424

PFam Domain Description : TrbM

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 86

Average sequence length: 111.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07424	Q69B92_CAMJE_24_142	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07424	Q4L0S8_HAEIF_31_204	100

Sequence based PCA Plot of the family - PF07424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay