3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07417

Details:

PFam ID : PF07417

PFam Domain Description : Transcriptional regulator Crl

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 63

Average sequence length: 117.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07417	A1EK96_VIBCH_3_86	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07417	A6FCA9_9GAMM_5_131	100

Sequence based PCA Plot of the family - PF07417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=68 Length=14
Motif3 Start=17 Length=8
Motif4 Start=47 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay