3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07415

Details:

PFam ID : PF07415

PFam Domain Description : Gammaherpesvirus latent membrane protein (LMP2) protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 7

Average sequence length: 284.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07415	Q8QS51_9BETA_178_455	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07415	Q69133_EBVG_1_117	100

Sequence based PCA Plot of the family - PF07415 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay