3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07411

Details:

PFam ID : PF07411

PFam Domain Description : Domain of unknown function (DUF1508)

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 372

Average sequence length: 48.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07411	E7JTM7_SHISO_26_82	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07411	B1ZMG8_OPITP_25_71	99.1

Sequence based PCA Plot of the family - PF07411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=8
Motif2 Start=4 Length=8
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay