3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07401

Details:

PFam ID : PF07401

PFam Domain Description : Bovine Lentivirus VIF protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 17

Average sequence length: 128.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07401	Q86552_9RETR_112_210	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07401	VIF_JEMBR_1_197	100

Sequence based PCA Plot of the family - PF07401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay