3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07398

Details:

PFam ID : PF07398

PFam Domain Description : MDMPI C-terminal domain

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 202

Average sequence length: 92.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07398	A1SJI6_NOCSJ_146_256	67.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07398	A4FAD2_SACEN_178_254	74

Sequence based PCA Plot of the family - PF07398 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay