3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07395

Details:

PFam ID : PF07395

PFam Domain Description : Mig-14

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 46

Average sequence length: 234.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07395	D4E9Z2_SEROD_1_43	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07395	D5QR51_METTR_28_306	97.7

Sequence based PCA Plot of the family - PF07395 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=64 Length=8
Motif2 Start=6 Length=18
Motif3 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay