3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07393

Details:

PFam ID : PF07393

PFam Domain Description : Exocyst complex component Sec10

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 272

Average sequence length: 483.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07393	EXOC5_CAEEL_46_658	72.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07393	D8UCR5_VOLCA_365_599	98.5

Sequence based PCA Plot of the family - PF07393 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=92 Length=8
Motif4 Start=157 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay