3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07381

Details:

PFam ID : PF07381

PFam Domain Description : Winged helix DNA-binding domain (DUF1495)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 28

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07381	Q0W465_UNCMA_11_99	8.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07381	Q0W4R7_UNCMA_13_103	100

Sequence based PCA Plot of the family - PF07381 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay