3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07361

Details:

PFam ID : PF07361

PFam Domain Description : Cytochrome b562

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 94

Average sequence length: 100.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07361	C9P7I2_VIBME_1_95	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07361	C1AD84_GEMAT_48_159	100

Sequence based PCA Plot of the family - PF07361 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay