3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07355

Details:

PFam ID : PF07355

PFam Domain Description : Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 190

Average sequence length: 256.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07355	B6FVM2_9CLOT_3_96	26.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07355	D3L6A6_9BACT_1_180	100

Sequence based PCA Plot of the family - PF07355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=143 Length=8
Motif2 Start=93 Length=8
Motif3 Start=54 Length=14
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay