3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07354

Details:

PFam ID : PF07354

PFam Domain Description : Zona-pellucida-binding protein (Sp38)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 19

Average sequence length: 185.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07354	C3YL41_BRAFL_933_1061	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07354	A3F966_XENLA_64_334	100

Sequence based PCA Plot of the family - PF07354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=219 Length=8
Motif3 Start=238 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay