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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07353
Details:

PFam ID : PF07353

PFam Domain Description : Uroplakin II

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 10

Average sequence length: 125.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF07353Q9TU13_RABIT_1_13157.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF07353D4A0E6_RAT_1_184100
Sequence based PCA Plot of the family - PF07353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay