3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07347

Details:

PFam ID : PF07347

PFam Domain Description : NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 55

Average sequence length: 91.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07347	A9V1E1_MONBE_4_75	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07347	E9HFD5_DAPPU_10_109	100

Sequence based PCA Plot of the family - PF07347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=50 Length=8
Motif3 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay