3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07345

Details:

PFam ID : PF07345

PFam Domain Description : Domain of unknown function (DUF1476)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 122

Average sequence length: 100.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07345	Q9L8L3_BRAJA_5_59	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07345	Q2W5R3_MAGSA_5_109	100

Sequence based PCA Plot of the family - PF07345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay