3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07344

Details:

PFam ID : PF07344

PFam Domain Description : Amastin surface glycoprotein

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 212

Average sequence length: 156.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07344	C6K3L5_9TRYP_18_197	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07344	C6K3L5_9TRYP_18_197	100

Sequence based PCA Plot of the family - PF07344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=160 Length=11
Motif2 Start=3 Length=14
Motif3 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay