3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07340

Details:

PFam ID : PF07340

PFam Domain Description : Cytomegalovirus IE1 protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 12

Average sequence length: 206.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07340	B8Y6Q4_HCMV_1_391	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07340	B8Y6Q4_HCMV_1_391	100

Sequence based PCA Plot of the family - PF07340 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=49 Length=8
Motif3 Start=11 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay