3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07337

Details:

PFam ID : PF07337

PFam Domain Description : DC-EC Repeat

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 62

Average sequence length: 31.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07337	Q6VRL7_HELPY_309_335	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07337	Q6VRS4_HELPY_648_674	90.1

Sequence based PCA Plot of the family - PF07337 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay