3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07334

Details:

PFam ID : PF07334

PFam Domain Description : Interferon-induced 35 kDa protein (IFP 35) N-terminus

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 18

Average sequence length: 64.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07334	Q0II49_BOVIN_1_57	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07334	HSFC1_ARATH_121_200	58

Sequence based PCA Plot of the family - PF07334 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay