3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07331

Details:

PFam ID : PF07331

PFam Domain Description : Tripartite tricarboxylate transporter TctB family

Number of Sequence in 50% Dataset : 428

Number of Sequence in Full Dataset : 801

Average sequence length: 143.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07331	D9PF79_9ZZZZ_3_51	68.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07331	C0D2V2_9CLOT_1_67	99.8

Sequence based PCA Plot of the family - PF07331 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay