3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07328

Details:

PFam ID : PF07328

PFam Domain Description : T-DNA border endonuclease VirD1

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 10

Average sequence length: 128.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07328	D6WME2_TRICA_20_138	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07328	Q1M9R4_RHIL3_3_151	100

Sequence based PCA Plot of the family - PF07328 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay