3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07324

Details:

PFam ID : PF07324

PFam Domain Description : DiGeorge syndrome critical region 6 (DGCR6) protein

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 50

Average sequence length: 155.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07324	Q54G36_DICDI_406_587	38.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07324	C4QAY7_SCHMA_24_223	97.9

Sequence based PCA Plot of the family - PF07324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay