3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07321

Details:

PFam ID : PF07321

PFam Domain Description : Type III secretion protein YscO

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 29

Average sequence length: 141.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07321	D2TXP0_9ENTR_1_153	6.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07321	E8LKF3_9GAMM_1_156	96.4

Sequence based PCA Plot of the family - PF07321 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay