3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07317

Details:

PFam ID : PF07317

PFam Domain Description : Flagellar regulator YcgR

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 98

Average sequence length: 105.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07317	E7RX70_9BURK_9_116	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07317	YCGR_NITEC_24_133	100

Sequence based PCA Plot of the family - PF07317 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=75 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay