3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07311

Details:

PFam ID : PF07311

PFam Domain Description : Dodecin

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 263

Average sequence length: 64.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07311	Q0C475_HYPNA_10_89	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07311	Q3IR65_NATPD_1_65	100

Sequence based PCA Plot of the family - PF07311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=44 Length=8
Motif2 Start=11 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay