3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07309

Details:

PFam ID : PF07309

PFam Domain Description : FlaG protein

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 129

Average sequence length: 111

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07309	A3SFU4_9RHOB_1_123	65.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07309	A3SFU4_9RHOB_1_123	100

Sequence based PCA Plot of the family - PF07309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=44 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay