3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07307

Details:

PFam ID : PF07307

PFam Domain Description : Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 61

Average sequence length: 189.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07307	E7M434_9BACL_16_234	96

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07307	E7M434_9BACL_16_234	100

Sequence based PCA Plot of the family - PF07307 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=104 Length=8
Motif3 Start=46 Length=8
Motif4 Start=71 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay