3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07302

Details:

PFam ID : PF07302

PFam Domain Description : AroM protein

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 74

Average sequence length: 213.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07302	C6WHA6_ACTMD_10_234	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07302	C6WHA6_ACTMD_10_234	100

Sequence based PCA Plot of the family - PF07302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=92 Length=8
Motif3 Start=186 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay