3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07299

Details:

PFam ID : PF07299

PFam Domain Description : Fibronectin-binding protein (FBP)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 116

Average sequence length: 155.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07299	C8KZ74_9PAST_61_235	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07299	D2BND2_LACLK_1_216	99.1

Sequence based PCA Plot of the family - PF07299 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=105 Length=11
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay