3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07298

Details:

PFam ID : PF07298

PFam Domain Description : NnrU protein

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 281

Average sequence length: 196.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07298	E6X003_NITSE_54_244	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07298	E8RPZ7_9CAUL_3_227	100

Sequence based PCA Plot of the family - PF07298 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay