3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07297

Details:

PFam ID : PF07297

PFam Domain Description : Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 89

Average sequence length: 74.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07297	F2S997_TRITO_12_58	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07297	E1ZP24_9CHLO_2_82	100

Sequence based PCA Plot of the family - PF07297 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=40 Length=8
Motif3 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay