3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07292

Details:

PFam ID : PF07292

PFam Domain Description : Nmi/IFP 35 domain (NID)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 45

Average sequence length: 84.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07292	Q4TAQ2_TETNG_4_41	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07292	E1C4J8_CHICK_40_137	100

Sequence based PCA Plot of the family - PF07292 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay