3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07284

Details:

PFam ID : PF07284

PFam Domain Description : 2-vinyl bacteriochlorophyllide hydratase (BCHF)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 70

Average sequence length: 135.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07284	B8KT41_9GAMM_1_49	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07284	Q3B5T5_PELLD_4_143	100

Sequence based PCA Plot of the family - PF07284 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=8 Length=8
Motif2 Start=123 Length=11
Motif3 Start=22 Length=8
Motif4 Start=76 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay