3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07283

Details:

PFam ID : PF07283

PFam Domain Description : Conjugal transfer protein TrbH

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 50

Average sequence length: 110.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07283	D2L4E3_9DELT_43_127	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07283	F0TD64_9PROT_32_167	100

Sequence based PCA Plot of the family - PF07283 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay