3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07275

Details:

PFam ID : PF07275

PFam Domain Description : Antirestriction protein (ArdA)

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 202

Average sequence length: 157.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07275	E5LGA0_9GAMM_20_160	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07275	Q8PNK0_XANAC_5_209	99.0

Sequence based PCA Plot of the family - PF07275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=128 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay