3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07271

Details:

PFam ID : PF07271

PFam Domain Description : Cytadhesin P30/P32

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 24

Average sequence length: 134.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07271	E1L7P4_9FIRM_23_139	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07271	F1LW08_RAT_76_270	100

Sequence based PCA Plot of the family - PF07271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=18
Motif2 Start=36 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay