3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07263

Details:

PFam ID : PF07263

PFam Domain Description : Dentin matrix protein 1 (DMP1)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 68

Average sequence length: 296.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07263	Q30E91_9META_1_192	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07263	Q8HYA6_TADBR_33_320	92.5

Sequence based PCA Plot of the family - PF07263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=173 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay