3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07249

Details:

PFam ID : PF07249

PFam Domain Description : Cerato-platanin

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 91

Average sequence length: 109.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07249	A0PCY0_TRIAT_19_107	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07249	B5WYC3_COLGR_19_81	91.1

Sequence based PCA Plot of the family - PF07249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=41 Length=8
Motif3 Start=5 Length=8
Motif4 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay