3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07225

Details:

PFam ID : PF07225

PFam Domain Description : NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 66

Average sequence length: 101.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07225	Q5BS18_SCHJA_1_58	15.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07225	B7PNZ9_IXOSC_5_125	100

Sequence based PCA Plot of the family - PF07225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay