3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07219

Details:

PFam ID : PF07219

PFam Domain Description : HemY protein N-terminus

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 332

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07219	Q4ECJ3_9RICK_21_118	15.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07219	Q0FE46_9RHOB_30_144	100

Sequence based PCA Plot of the family - PF07219 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=80 Length=8
Motif4 Start=104 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay