3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07217

Details:

PFam ID : PF07217

PFam Domain Description : Heterokaryon incompatibility protein Het-C

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 123

Average sequence length: 412.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07217	D5G7E9_TUBMM_1_100	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07217	C0RZT4_PARBP_295_499	100

Sequence based PCA Plot of the family - PF07217 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=71 Length=8
Motif2 Start=579 Length=8
Motif3 Start=38 Length=8
Motif4 Start=122 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay