3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07202

Details:

PFam ID : PF07202

PFam Domain Description : T-complex protein 10 C-terminus

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 92

Average sequence length: 132.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07202	C1M144_SCHMA_1087_1154	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07202	E4Y0J4_OIKDI_170_349	100

Sequence based PCA Plot of the family - PF07202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=83 Length=8
Motif3 Start=47 Length=8
Motif4 Start=100 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay