3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07200

Details:

PFam ID : PF07200

PFam Domain Description : Modifier of rudimentary (Mod(r)) protein

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 163

Average sequence length: 139

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07200	E3X052_ANODA_115_185	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07200	D2A3L9_TRICA_17_168	100

Sequence based PCA Plot of the family - PF07200 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay