3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07196

Details:

PFam ID : PF07196

PFam Domain Description : Bacterial flagellin N-terminal helical region

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 743

Average sequence length: 56.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07196	B0TE02_HELMI_234_315	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07196	A4C6F9_9GAMM_319_378	98.1

Sequence based PCA Plot of the family - PF07196 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay