3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07188

Details:

PFam ID : PF07188

PFam Domain Description : Kaposi's sarcoma-associated herpesvirus (KSHV) K8 protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 3

Average sequence length: 64.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07188	E7M460_9BACL_4_194	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07188	E7M460_9BACL_4_194	100

Sequence based PCA Plot of the family - PF07188 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay